PII Tools Object Details

PII Detected

Personal
- date_of_birth [count=2]
  - 12/31/1999
    confidence: 1.0
    position: {"bboxes": [[[0.10038862664715137, 0.1484882855656171], [0.1943251167247498, 0.1484882855656171], [0.1943251167247498, 0.1610640708846275], [0.10038862664715137, 0.1610640708846275]]], "char": 48, "page": 0, "part": "page_0_text.txt"}
    context: ID: PM-XX-12345 DOB: 12/31/1999 Sex: Male Race/Ethnicity: White
  - 12/31/1999
    confidence: 1.0
    position: {"bboxes": [[[0.10038862664715137, 0.13363632048019256], [0.1943251167247498, 0.13363632048019256], [0.1943251167247498, 0.14621210579920296], [0.10038862664715137, 0.14621210579920296]]], "char": 21, "page": 4, "part": "page_4_text.txt"}
    context: Name: DOE, JOHN DOB: 12/31/1999 Sex: Male Race/Ethnicity: White
- address [count=11]
  - LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.5950980591618158, 0.045303036468197604], [0.9131505629595589, 0.045303036468197604], [0.9131505629595589, 0.05787882178720802], [0.5950980591618158, 0.05787882178720802]], [[0.5950980591618158, 0.05999994759607797], [0.8854513729319853, 0.05999994759607797], [0.8854513729319853, 0.07257573291508838], [0.5950980591618158, 0.07257573291508838]]], "char": 2219, "page": 0, "part": "page_0_text.txt"}
    context: State Het. Location Exon 1 Exon 14 LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.5950980591618158, 0.05999994759607797], [0.8854513729319853, 0.05999994759607797], [0.8854513729319853, 0.07257573291508838], [0.5950980591618158, 0.07257573291508838]]], "char": 2253, "page": 0, "part": "page_0_text.txt"}
    context: Exon 14 LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.06215686424105775, 0.034848454022648356], [0.38020960489908856, 0.034848454022648356], [0.38020960489908856, 0.04742423934165878], [0.06215686424105775, 0.04742423934165878]], [[0.06215686424105775, 0.049696951201467804], [0.352510414871515, 0.049696951201467804], [0.352510414871515, 0.06227273652047822], [0.06215686424105775, 0.06227273652047822]]], "char": 0, "page": 1, "part": "page_1_text.txt"}
    context: LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.06215686424105775, 0.049696951201467804], [0.352510414871515, 0.049696951201467804], [0.352510414871515, 0.06227273652047822], [0.06215686424105775, 0.06227273652047822]]], "char": 34, "page": 1, "part": "page_1_text.txt"}
    context: LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.06215686424105775, 0.034848454022648356], [0.38020960489908856, 0.034848454022648356], [0.38020960489908856, 0.04742423934165878], [0.06215686424105775, 0.04742423934165878]], [[0.06215686424105775, 0.049696951201467804], [0.352510414871515, 0.049696951201467804], [0.352510414871515, 0.06227273652047822], [0.06215686424105775, 0.06227273652047822]]], "char": 0, "page": 2, "part": "page_2_text.txt"}
    context: LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.06215686424105775, 0.049696951201467804], [0.352510414871515, 0.049696951201467804], [0.352510414871515, 0.06227273652047822], [0.06215686424105775, 0.06227273652047822]]], "char": 34, "page": 2, "part": "page_2_text.txt"}
    context: LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.4529215993444904, 0.5221023174247357], [0.7145982131459354, 0.5221023174247357], [0.7145982131459354, 0.533465953788372], [0.4529215993444904, 0.533465953788372]]], "char": 3427, "page": 2, "part": "page_2_text.txt"}
    context: Partners Healthcare Personalized Medicine (LMM, 65 Landsdowne St, Cambridge, MA 02139; 617-768-8500; CLIA#22D1005307). This test has
  - LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.06215686424105775, 0.034848454022648356], [0.38020960489908856, 0.034848454022648356], [0.38020960489908856, 0.04742423934165878], [0.06215686424105775, 0.04742423934165878]], [[0.06215686424105775, 0.049696951201467804], [0.352510414871515, 0.049696951201467804], [0.352510414871515, 0.06227273652047822], [0.06215686424105775, 0.06227273652047822]]], "char": 0, "page": 3, "part": "page_3_text.txt"}
    context: LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.06215686424105775, 0.049696951201467804], [0.352510414871515, 0.049696951201467804], [0.352510414871515, 0.06227273652047822], [0.06215686424105775, 0.06227273652047822]]], "char": 34, "page": 3, "part": "page_3_text.txt"}
    context: LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.5950980591618158, 0.042878738557449496], [0.9426076053793914, 0.042878738557449496], [0.9426076053793914, 0.05545452387645991], [0.5950980591618158, 0.05545452387645991]], [[0.5950980591618158, 0.05742421776357323], [0.9026863247740502, 0.05742421776357323], [0.9026863247740502, 0.07000000308258365], [0.5950980591618158, 0.07000000308258365]]], "char": 847, "page": 4, "part": "page_4_text.txt"}
    context: x coverage (%) Gene 8x coverage (%) LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
  - 65 Landsdowne St, Cambridge, MA 02139
    confidence: 1.0
    position: {"bboxes": [[[0.5950980591618158, 0.05742421776357323], [0.9026863247740502, 0.05742421776357323], [0.9026863247740502, 0.07000000308258365], [0.5950980591618158, 0.07000000308258365]]], "char": 881, "page": 4, "part": "page_4_text.txt"}
    context: coverage (%) LABORATORY FOR MOLECULAR MEDICINE 65 Landsdowne St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners
- phone [count=11]
  - (617) 768-8500
    confidence: 1.0
    position: {"bboxes": [[[0.6468509349947661, 0.07484844477489741], [0.7588095072827308, 0.07484844477489741], [0.7588095072827308, 0.08742423009390783], [0.6468509349947661, 0.08742423009390783]]], "char": 2298, "page": 0, "part": "page_0_text.txt"}
    context: St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http
  - (617) 768-8513
    confidence: 1.0
    position: {"bboxes": [[[0.806656532038271, 0.07484844477489741], [0.9186124115987541, 0.07484844477489741], [0.9186124115987541, 0.08742423009390783], [0.806656532038271, 0.08742423009390783]]], "char": 2320, "page": 0, "part": "page_0_text.txt"}
    context: Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners.org/lmm
  - (617) 768-8500
    confidence: 1.0
    position: {"bboxes": [[[0.11390981487199373, 0.06454544838028725], [0.22586825003031813, 0.06454544838028725], [0.22586825003031813, 0.07712123369929766], [0.11390981487199373, 0.07712123369929766]]], "char": 79, "page": 1, "part": "page_1_text.txt"}
    context: St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http
  - (617) 768-8513
    confidence: 1.0
    position: {"bboxes": [[[0.2737152997185202, 0.06454544838028725], [0.38567135380763634, 0.06454544838028725], [0.38567135380763634, 0.07712123369929766], [0.2737152997185202, 0.07712123369929766]]], "char": 101, "page": 1, "part": "page_1_text.txt"}
    context: Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners.org/lmm
  - 617-768-8500
    confidence: 1.0
    position: {"bboxes": [[[0.05883340274586397, 0.18090527467053347], [0.1501274981529884, 0.18090527467053347], [0.1501274981529884, 0.19226891103416982], [0.05883340274586397, 0.19226891103416982]]], "char": 715, "page": 1, "part": "page_1_text.txt"}
    context: ry for Molecular Medicine at: [email protected] or 617-768-8500. DETAILED VARIANT INFORMATION (VARIANTS RELEVANT
  - (617) 768-8500
    confidence: 1.0
    position: {"bboxes": [[[0.11390981487199373, 0.06454544838028725], [0.22586825003031813, 0.06454544838028725], [0.22586825003031813, 0.07712123369929766], [0.11390981487199373, 0.07712123369929766]]], "char": 79, "page": 2, "part": "page_2_text.txt"}
    context: St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http
  - (617) 768-8513
    confidence: 1.0
    position: {"bboxes": [[[0.2737152997185202, 0.06454544838028725], [0.38567135380763634, 0.06454544838028725], [0.38567135380763634, 0.07712123369929766], [0.2737152997185202, 0.07712123369929766]]], "char": 101, "page": 2, "part": "page_2_text.txt"}
    context: Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners.org/lmm
  - (617) 768-8500
    confidence: 1.0
    position: {"bboxes": [[[0.11390981487199373, 0.06454544838028725], [0.22586825003031813, 0.06454544838028725], [0.22586825003031813, 0.07712123369929766], [0.11390981487199373, 0.07712123369929766]]], "char": 79, "page": 3, "part": "page_3_text.txt"}
    context: St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http
  - (617) 768-8513
    confidence: 1.0
    position: {"bboxes": [[[0.2737152997185202, 0.06454544838028725], [0.38567135380763634, 0.06454544838028725], [0.38567135380763634, 0.07712123369929766], [0.2737152997185202, 0.07712123369929766]]], "char": 101, "page": 3, "part": "page_3_text.txt"}
    context: Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners.org/lmm
  - (617) 768-8500
    confidence: 1.0
    position: {"bboxes": [[[0.6511637868444904, 0.07197439790976168], [0.7629533655503217, 0.07197439790976168], [0.7629533655503217, 0.0845501832287721], [0.6511637868444904, 0.0845501832287721]]], "char": 926, "page": 4, "part": "page_4_text.txt"}
    context: St, Cambridge, MA 02139 Phone: (617) 768-8500 / Fax: (617) 768-8513 http
  - (617) 768-8513
    confidence: 1.0
    position: {"bboxes": [[[0.8130950927734375, 0.07197439790976168], [0.9247219110626022, 0.07197439790976168], [0.9247219110626022, 0.0845501832287721], [0.8130950927734375, 0.0845501832287721]]], "char": 948, "page": 4, "part": "page_4_text.txt"}
    context: Phone: (617) 768-8500 / Fax: (617) 768-8513 http://pcpgm.partners.org/lmm
- email [count=1]
  - [email protected]
    confidence: 1.0
    position: {"bboxes": [[[0.7982352761661305, 0.16757572058475378], [0.9180295856949551, 0.16757572058475378], [0.9180295856949551, 0.17893935694839014], [0.7982352761661305, 0.17893935694839014]]], "char": 695, "page": 1, "part": "page_1_text.txt"}
    context: Laboratory for Molecular Medicine at: [email protected] or 617-768-8500. DETAILED
- name [count=27]
  - Leclerc J
    confidence: 1.0
    position: {"bboxes": [[[0.2780293982013378, 0.801818154074929], [0.3311616984847324, 0.801818154074929], [0.3311616984847324, 0.8131817904385653], [0.2780293982013378, 0.8131817904385653]]], "char": 5063, "page": 2, "part": "page_2_text.txt"}
    context: S, Wacrenier A, Leclerc J, Lejeune S. Identification
  - J. Clin
    confidence: 1.0
    position: {"bboxes": [[[0.4735587126289318, 0.8151477081607087], [0.5088381299785539, 0.8151477081607087], [0.5088381299785539, 0.826511344524345], [0.4735587126289318, 0.826511344524345]]], "char": 5228, "page": 2, "part": "page_2_text.txt"}
    context: liver metastasis. 2013. J. Clin. Oncol. 31(
  - Di Gregorio
    confidence: 1.0
    position: {"bboxes": [[[0.05883828954758987, 0.881795478589607], [0.13133826910280713, 0.881795478589607], [0.13133826910280713, 0.8931591149532434], [0.05883828954758987, 0.8931591149532434]]], "char": 5509, "page": 2, "part": "page_2_text.txt"}
    context: 700-7 Di Gregorio C, Frattini M,
  - Anselmi L
    confidence: 1.0
    position: {"bboxes": [[[0.8003235860587725, 0.10606060606060606], [0.8626028821359273, 0.10606060606060606], [0.8626028821359273, 0.11742424242424243], [0.8003235860587725, 0.11742424242424243]]], "char": 343, "page": 3, "part": "page_3_text.txt"}
    context: Ponz de Leon M, Anselmi L, Mareni C,
  - Varesco L. Prevalence
    confidence: 1.0
    position: {"bboxes": [[[0.11744117736816406, 0.11939016014638573], [0.2540147070791207, 0.11939016014638573], [0.2540147070791207, 0.13075379651002209], [0.11744117736816406, 0.13075379651002209]]], "char": 374, "page": 3, "part": "page_3_text.txt"}
    context: , Bruzzi P, Varesco L. Prevalence of the Y165C
  - Sugimura H. Adenine
    confidence: 1.0
    position: {"bboxes": [[[0.4831617268082363, 0.15937882240372475], [0.6154411166321998, 0.15937882240372475], [0.6154411166321998, 0.1707424587673611], [0.4831617268082363, 0.1707424587673611]]], "char": 643, "page": 3, "part": "page_3_text.txt"}
    context: H, Tsuneyoshi T, Sugimura H. Adenine DNA glycosylase activity of 14
  - Korf BR
    confidence: 1.0
    position: {"bboxes": [[[0.305102952944687, 0.19936748466106377], [0.3540293874304279, 0.19936748466106377], [0.3540293874304279, 0.21073112102470012], [0.305102952944687, 0.21073112102470012]]], "char": 870, "page": 3, "part": "page_3_text.txt"}
    context: W, Kalia SS, Korf BR, Martin CL, McGuire
  - Martin CL
    confidence: 1.0
    position: {"bboxes": [[[0.3603970396752451, 0.19936748466106377], [0.4222058564229728, 0.19936748466106377], [0.4222058564229728, 0.21073112102470012], [0.3603970396752451, 0.21073112102470012]]], "char": 879, "page": 3, "part": "page_3_text.txt"}
    context: SS, Korf BR, Martin CL, McGuire AL, Nussbaum
  - Daniel JM
    confidence: 1.0
    position: {"bboxes": [[[0.6139706381006178, 0.19936748466106377], [0.67420595455793, 0.19936748466106377], [0.67420595455793, 0.21073112102470012], [0.6139706381006178, 0.21073112102470012]]], "char": 917, "page": 3, "part": "page_3_text.txt"}
    context: Nussbaum RL, O'Daniel JM, Ormond KE, Rehm
  - Ormond KE
    confidence: 1.0
    position: {"bboxes": [[[0.6804559745040595, 0.19936748466106377], [0.7536177292368771, 0.19936748466106377], [0.7536177292368771, 0.21073112102470012], [0.6804559745040595, 0.21073112102470012]]], "char": 928, "page": 3, "part": "page_3_text.txt"}
    context: O'Daniel JM, Ormond KE, Rehm HL, Watson
  - Rowan AJ
    confidence: 1.0
    position: {"bboxes": [[[0.13197042427810968, 0.2525379681828046], [0.1927645440195121, 0.2525379681828046], [0.1927645440195121, 0.26390160454644096], [0.13197042427810968, 0.26390160454644096]]], "char": 1181, "page": 3, "part": "page_3_text.txt"}
    context: Halford SE, Rowan AJ, Lipton L, Sieber
  - Lipton L
    confidence: 1.0
    position: {"bboxes": [[[0.19904395957398258, 0.2525379681828046], [0.25124982447406047, 0.2525379681828046], [0.25124982447406047, 0.26390160454644096], [0.19904395957398258, 0.26390160454644096]]], "char": 1191, "page": 3, "part": "page_3_text.txt"}
    context: SE, Rowan AJ, Lipton L, Sieber OM, Pack
  - Sieber OM
    confidence: 1.0
    position: {"bboxes": [[[0.25726452995749083, 0.2525379681828046], [0.322176316205193, 0.2525379681828046], [0.322176316205193, 0.26390160454644096], [0.25726452995749083, 0.26390160454644096]]], "char": 1201, "page": 3, "part": "page_3_text.txt"}
    context: AJ, Lipton L, Sieber OM, Pack K, Thomas
  - Thomas HJ
    confidence: 1.0
    position: {"bboxes": [[[0.37685272117066226, 0.2525379681828046], [0.44491158279718135, 0.2525379681828046], [0.44491158279718135, 0.26390160454644096], [0.37685272117066226, 0.26390160454644096]]], "char": 1220, "page": 3, "part": "page_3_text.txt"}
    context: OM, Pack K, Thomas HJ, Hodgson SV, Bodmer
  - J. Pathol
    confidence: 1.0
    position: {"bboxes": [[[0.6886176813661663, 0.2658675222685843], [0.7398675158132915, 0.2658675222685843], [0.7398675158132915, 0.27723115863222064], [0.6886176813661663, 0.27723115863222064]]], "char": 1403, "page": 3, "part": "page_3_text.txt"}
    context: . 2003. Am. J. Pathol. 162(5)
  - Shao H
    confidence: 1.0
    position: {"bboxes": [[[0.19786741219314874, 0.2925266304401436], [0.2414997325224035, 0.2925266304401436], [0.2414997325224035, 0.30389026680378], [0.19786741219314874, 0.30389026680378]]], "char": 1452, "page": 3, "part": "page_3_text.txt"}
    context: H, Zhang X, Shao H, Huang L, Qin
  - Huang L
    confidence: 1.0
    position: {"bboxes": [[[0.24767620111602584, 0.2925266304401436], [0.2996908948312398, 0.2925266304401436], [0.2996908948312398, 0.30389026680378], [0.24767620111602584, 0.30389026680378]]], "char": 1460, "page": 3, "part": "page_3_text.txt"}
    context: X, Shao H, Huang L, Qin C, Zhang
  - Zhang L.
    confidence: 1.0
    position: {"bboxes": [[[0.34572035346935, 0.2925266304401436], [0.39852917739768434, 0.2925266304401436], [0.39852917739768434, 0.30389026680378], [0.34572035346935, 0.30389026680378]]], "char": 1476, "page": 3, "part": "page_3_text.txt"}
    context: L, Qin C, Zhang L. 2010. LMNA E82
  - Wang L
    confidence: 1.0
    position: {"bboxes": [[[0.10824981390261183, 0.3858335090406013], [0.15574982587028952, 0.3858335090406013], [0.15574982587028952, 0.3971971454042377], [0.10824981390261183, 0.3971971454042377]]], "char": 1924, "page": 3, "part": "page_3_text.txt"}
    context: Sun LP, Wang L, Wang H, Zhang
  - Wang H
    confidence: 1.0
    position: {"bboxes": [[[0.16197042527541616, 0.3858335090406013], [0.21148514591790493, 0.3858335090406013], [0.21148514591790493, 0.3971971454042377], [0.16197042527541616, 0.3971971454042377]]], "char": 1932, "page": 3, "part": "page_3_text.txt"}
    context: LP, Wang L, Wang H, Zhang YH, Pu
  - Zhang YH
    confidence: 1.0
    position: {"bboxes": [[[0.2176615895788654, 0.3858335090406013], [0.2779410119150199, 0.3858335090406013], [0.2779410119150199, 0.3971971454042377], [0.2176615895788654, 0.3971971454042377]]], "char": 1940, "page": 3, "part": "page_3_text.txt"}
    context: L, Wang H, Zhang YH, Pu JL. 2010
  - Aretz S.
    confidence: 1.0
    position: {"bboxes": [[[0.7718083001429739, 0.42582217129794037], [0.8195142558976716, 0.42582217129794037], [0.8195142558976716, 0.4371858076615767], [0.7718083001429739, 0.4371858076615767]]], "char": 2236, "page": 3, "part": "page_3_text.txt"}
    context: JR, Hes FJ, Aretz S. Expanded extracolonic tumor
  - Wang H
    confidence: 1.0
    position: {"bboxes": [[[0.05880861967996834, 0.4656631007339015], [0.1085144990409901, 0.4656631007339015], [0.1085144990409901, 0.4770267370975379], [0.05880861967996834, 0.4770267370975379]]], "char": 2360, "page": 3, "part": "page_3_text.txt"}
    context: 1-10 Wang H, Wang J, Zheng
  - Wang J
    confidence: 1.0
    position: {"bboxes": [[[0.11469098010094338, 0.4656631007339015], [0.15880863962609784, 0.4656631007339015], [0.15880863962609784, 0.4770267370975379], [0.11469098010094338, 0.4770267370975379]]], "char": 2368, "page": 3, "part": "page_3_text.txt"}
    context: Wang H, Wang J, Zheng W, Wang
  - Zheng W
    confidence: 1.0
    position: {"bboxes": [[[0.16508805518056832, 0.4656631007339015], [0.22039685218162786, 0.4656631007339015], [0.22039685218162786, 0.4770267370975379], [0.16508805518056832, 0.4770267370975379]]], "char": 2376, "page": 3, "part": "page_3_text.txt"}
    context: H, Wang J, Zheng W, Wang X, Wang
  - Christina Austin-Tse
    confidence: 1.0
    position: {"bboxes": [[[0.2458872826270808, 0.5590795651830808], [0.3740490682763991, 0.5590795651830808], [0.3740490682763991, 0.5704432015467171], [0.2458872826270808, 0.5704432015467171]]], "char": 2873, "page": 3, "part": "page_3_text.txt"}
    context: REPORT PREPARATION by: Christina Austin-Tse, PhD on November 4
  - Ozge Birsoy
    confidence: 1.0
    position: {"bboxes": [[[0.18687251969879748, 0.5724091192688605], [0.2613431145163143, 0.5724091192688605], [0.2613431145163143, 0.5837727556324969], [0.18687251969879748, 0.5837727556324969]]], "char": 2936, "page": 3, "part": "page_3_text.txt"}
    context: FINAL REPORT by: Ozge Birsoy, PhD on November 13
- first_name [count=1]
  - Christina
    confidence: 1.0
    position: {"bboxes": [[[0.2458872826270808, 0.5590795651830808], [0.30287257674472784, 0.5590795651830808], [0.30287257674472784, 0.5704432015467171], [0.2458872826270808, 0.5704432015467171]]], "char": 2873, "page": 3, "part": "page_3_text.txt"}
    context: REPORT PREPARATION by: Christina Austin-Tse, PhD
- last_name [count=1]
  - Austin-Tse
    confidence: 1.0
    position: {"bboxes": [[[0.306284337261923, 0.5590795651830808], [0.3740490682763991, 0.5590795651830808], [0.3740490682763991, 0.5704432015467171], [0.306284337261923, 0.5704432015467171]]], "char": 2883, "page": 3, "part": "page_3_text.txt"}
    context: REPORT PREPARATION by: Christina Austin-Tse, PhD on November 4
Sensitive
- gender [count=2]
  - Male
    confidence: 1.0
    position: {"bboxes": [[[0.09256057489931194, 0.16334025065104166], [0.12883646347943475, 0.16334025065104166], [0.12883646347943475, 0.1759160359700521], [0.09256057489931194, 0.1759160359700521]]], "char": 64, "page": 0, "part": "page_0_text.txt"}
    context: Sex: Male
  - Male
    confidence: 1.0
    position: {"bboxes": [[[0.09256057489931194, 0.1484882855656171], [0.12883646347943475, 0.1484882855656171], [0.12883646347943475, 0.1610640708846275], [0.09256057489931194, 0.1610640708846275]]], "char": 37, "page": 4, "part": "page_4_text.txt"}
    context: Sex: Male
Medical
- health [count=5]
  - Name: DOE, JOHN Accession ID: PM-XX-12345 DOB: 12/31/1999 Sex: Male Race/Ethnicity: White Family #: F012345 MRN: 0123456789 Referring facility: Double Helix Hospital Referring physician: Dr. DNA Copies to: CGC Specimen: Blood, Peripheral Lab Control Number: ABC123 Received: 01/24/2014 Page: 1 of 4 Test(s) performed: Whole genome sequencing Indication for test: Clinical diagnosis and family history of DCM with arrhythmia RESULT: Positive Findings explain patient phenotype, Incidental findings identified APPROACH Sequencing of this individual's genome was performed and the data was analyzed to identify previously reported and novel variants in (1) 335 genes that have been previously implicated in various cardiac diseases and myopathies (see
    confidence: 0.8
    position: {"bboxes": [[[0.058823529411764705, 0.1110606338038589], [0.2550734974979575, 0.1110606338038589], [0.2550734974979575, 0.13000002774325284], [0.058823529411764705, 0.13000002774325284]], [[0.5882352941176471, 0.1110606338038589], [0.897647034888174, 0.1110606338038589], [0.897647034888174, 0.13000002774325284], [0.5882352941176471, 0.13000002774325284]], [[0.058823529411764705, 0.1484882855656171], [0.1943251167247498, 0.1484882855656171], [0.1943251167247498, 0.1610640708846275], [0.058823529411764705, 0.1610640708846275]], [[0.05883978550730188, 0.16334025065104166], [0.12883646347943475, 0.16334025065104166], [0.12883646347943475, 0.1759160359700521], [0.05883978550730188, 0.1759160359700521]], [[0.05883978550730188, 0.17804132326684816], [0.2237493976268893, 0.17804132326684816], [0.2237493976268893, 0.1906171085858586], [0.05883978550730188, 0.1906171085858586]], [[0.05883968577665441, 0.19289328835227273], [0.19863774418051727, 0.19289328835227273], [0.19863774418051727, 0.20546907367128314], [0.05883968577665441, 0.20546907367128314]], [[0.32198234009586907, 0.1484882855656171], [0.4625453076331444, 0.1484882855656171], [0.4625453076331444, 0.1610640708846275], [0.32198234009586907, 0.1610640708846275]], [[0.3217870425554662, 0.16334025065104166], [0.6208310594745711, 0.16334025065104166], [0.6208310594745711, 0.1759160359700521], [0.3217870425554662, 0.1759160359700521]], [[0.32085924834207774, 0.17804132326684816], [0.5367244645660999, 0.17804132326684816], [0.5367244645660999, 0.1906171085858586], [0.32085924834207774, 0.1906171085858586]], [[0.32178691789215685, 0.19289328835227273], [0.42797811670241015, 0.19289328835227273], [0.42797811670241015, 0.20546907367128314], [0.32178691789215685, 0.20546907367128314]], [[0.647065704944087, 0.1484882855656171], [0.860082688674428, 0.1484882855656171], [0.860082688674428, 0.1610640708846275], [0.647065704944087, 0.1610640708846275]], [[0.6470819610396242, 0.16334025065104166], [0.8670970443027471, 0.16334025065104166], [0.8670970443027471, 0.1759160359700521], [0.6470819610396242, 0.1759160359700521]], [[0.6470656052134396, 0.17804132326684816], [0.817052903518178, 0.17804132326684816], [0.817052903518178, 0.1906171085858586], [0.6470656052134396, 0.1906171085858586]], [[0.6470655553481158, 0.19289328835227273], [0.7321812748129851, 0.19289328835227273], [0.7321812748129851, 0.20546907367128314], [0.6470655553481158, 0.20546907367128314]], [[0.0588070738549326, 0.22244632605350378], [0.4054866117589614, 0.22244632605350378], [0.4054866117589614, 0.2350221113725142], [0.0588070738549326, 0.2350221113725142]], [[0.05882335488313164, 0.23729829113892834], [0.6571067859923917, 0.23729829113892834], [0.6571067859923917, 0.24987407645793877], [0.05882335488313164, 0.24987407645793877]], [[0.4105882332995047, 0.2759091155697601], [0.5896237441916871, 0.2759091155697601], [0.5896237441916871, 0.29363636055378], [0.4105882332995047, 0.29363636055378]], [[0.18431373047672844, 0.29651518542357164], [0.8209837371227788, 0.29651518542357164], [0.8209837371227788, 0.31424243040759153], [0.18431373047672844, 0.31424243040759153]], [[0.058823529411764705, 0.3333333333333333], [0.1602353114707797, 0.3333333333333333], [0.1602353114707797, 0.3484848484848485], [0.058823529411764705, 0.3484848484848485]], [[0.058818630143707876, 0.35106435448232326], [0.9240538154552186, 0.35106435448232326], [0.9240538154552186, 0.3624280293782552], [0.058818630143707876, 0.3624280293782552]], [[0.05881864261003881, 0.3643939471003985], [0.6615097943474265, 0.3643939471003985], [0.6615097943474265, 0.37575758346403487], [0.05881864261003881, 0.37575758346403487]]], "char": 0, "page": 0, "part": "page_0_text.txt"}
    context: Name: DOE, JOHN Accession ID: PM-XX-12345 DOB: 12/31/1999 Sex: Male Race/Ethnicity: White Family #: F012345 MRN: 0123456789 Referring facility: Double Helix Hospital Referring physician: Dr. DNA Copies to: CGC Specimen: Blood, Peripheral Lab Control Number: ABC123 Received: 01/24/2014 Page: 1 of 4 Test(s) performed: Whole genome sequencing Indication for test: Clinical diagnosis and family history of DCM with arrhythmia RESULT: Positive Findings explain patient phenotype, Incidental findings identified APPROACH Sequencing of this individual's genome was performed and the data was analyzed to identify previously reported and novel variants in (1) 335 genes that have been previously implicated in various cardiac diseases and myopathies (see
  - Triplet repeat expansions, translocations and large copy number events are currently not reliably detected by genome sequencing. Furthermore, not all disease-associated genes have been identified and the clinical significance of variation in many genes is not well understood. It is recommended that genomic sequencing data is periodically reinterpreted, especially when new symptoms arise. REFERENCES Buisine MP, Cattan S, Wacrenier A, Leclerc J, Lejeune S. Identification of a patient with atypical MUTYH-associated polyposis through detection of the KRAS c.34G>T mutation in liver metastasis. 2013. J. Clin. Oncol. 31(9):e125-7 D'Agostino VG, Minoprio A, Torreri P, Marinoni I, Bossa
    confidence: 0.74
    position: {"bboxes": [[[0.5962793686810661, 0.7174242578371607], [0.9148088841656454, 0.7174242578371607], [0.9148088841656454, 0.728787894200797], [0.5962793686810661, 0.728787894200797]], [[0.058823529411764705, 0.7307538119229403], [0.9113236969592524, 0.7307538119229403], [0.9113236969592524, 0.7421174482865767], [0.058823529411764705, 0.7421174482865767]], [[0.05880881914126328, 0.74408336600872], [0.934941011316636, 0.74408336600872], [0.934941011316636, 0.7554470023723564], [0.05880881914126328, 0.7554470023723564]], [[0.05880881914126328, 0.7574129200944997], [0.464367635888991, 0.7574129200944997], [0.464367635888991, 0.768776556458136], [0.05880881914126328, 0.768776556458136]], [[0.058823529411764705, 0.7840909090909091], [0.17554902718737234, 0.7840909090909091], [0.17554902718737234, 0.7992424242424242], [0.058823529411764705, 0.7992424242424242]], [[0.058823529411764705, 0.801818154074929], [0.8863530377157374, 0.801818154074929], [0.8863530377157374, 0.8131817904385653], [0.058823529411764705, 0.8131817904385653]], [[0.058823529411764705, 0.8151477081607087], [0.6414853264303768, 0.8151477081607087], [0.6414853264303768, 0.826511344524345], [0.058823529411764705, 0.826511344524345]], [[0.05883828954758987, 0.841806816332268], [0.4044412351122089, 0.841806816332268], [0.4044412351122089, 0.8531704526959043], [0.05883828954758987, 0.8531704526959043]]], "char": 4625, "page": 2, "part": "page_2_text.txt"}
    context: Triplet repeat expansions, translocations and large copy number events are currently not reliably detected by genome sequencing. Furthermore, not all disease-associated genes have been identified and the clinical significance of variation in many genes is not well understood. It is recommended that genomic sequencing data is periodically reinterpreted, especially when new symptoms arise. REFERENCES Buisine MP, Cattan S, Wacrenier A, Leclerc J, Lejeune S. Identification of a patient with atypical MUTYH-associated polyposis through detection of the KRAS c.34G>T mutation in liver metastasis. 2013. J. Clin. Oncol. 31(9):e125-7 D'Agostino VG, Minoprio A, Torreri P, Marinoni I, Bossa
  - C, Petrucci TC, Albertini AM, Ranzani GN, Bignami M, Mazzei F. Functional analysis of MUTYH mutated proteins associated with familial adenomatous polyposis. 2010. DNA Repair (Amst.). 9(6):700-7 Di Gregorio C, Frattini M, Maffei S, Ponti G, Losi L, Pedroni M, Venesio T, Bertario L, Varesco L, Risio M, Ponz de Leon M. Immunohistochemical expression of MYH protein can be used to identify patients with MYH-associated polyposis. 2006. Gastroenterology
    confidence: 0.69
    position: {"bboxes": [[[0.4076618369108711, 0.841806816332268], [0.9372210533790339, 0.841806816332268], [0.9372210533790339, 0.8531704526959043], [0.4076618369108711, 0.8531704526959043]], [[0.05883828954758987, 0.8551363704180477], [0.767176509682649, 0.8551363704180477], [0.767176509682649, 0.866500006781684], [0.05883828954758987, 0.866500006781684]], [[0.05883828954758987, 0.881795478589607], [0.8009854485006893, 0.881795478589607], [0.8009854485006893, 0.8931591149532434], [0.05883828954758987, 0.8931591149532434]], [[0.05883828954758987, 0.8951249556107954], [0.9224858502157374, 0.8951249556107954], [0.9224858502157374, 0.9064885919744318], [0.05883828954758987, 0.9064885919744318]]], "char": 5314, "page": 2, "part": "page_2_text.txt"}
    context: C, Petrucci TC, Albertini AM, Ranzani GN, Bignami M, Mazzei F. Functional analysis of MUTYH mutated proteins associated with familial adenomatous polyposis. 2010. DNA Repair (Amst.). 9(6):700-7 Di Gregorio C, Frattini M, Maffei S, Ponti G, Losi L, Pedroni M, Venesio T, Bertario L, Varesco L, Risio M, Ponz de Leon M. Immunohistochemical expression of MYH protein can be used to identify patients with MYH-associated polyposis. 2006. Gastroenterology
  - Yang J. 2010. Identification of a new lamin A/C mutation in a Chinese family affected with atrioventricular block as the prominent phenotype. J. Huazhong Univ. Sci. Technol. Med. Sci. 30(1):103-7 REPORT PREPARATION by: Christina Austin-Tse, PhD on November 4, 2015 FINAL REPORT by: Ozge Birsoy, PhD on November
    confidence: 0.64
    position: {"bboxes": [[[0.5414262659409467, 0.5056517629912405], [0.9195146747663909, 0.5056517629912405], [0.9195146747663909, 0.517015399354877], [0.5414262659409467, 0.517015399354877]], [[0.05880861967996834, 0.5189813170770202], [0.8938285478579453, 0.5189813170770202], [0.8938285478579453, 0.5304545392893781], [0.05880861967996834, 0.5304545392893781]], [[0.05882846607881434, 0.5590795651830808], [0.5454167384727329, 0.5590795651830808], [0.5454167384727329, 0.5704432015467171], [0.05882846607881434, 0.5704432015467171]], [[0.0588284162134906, 0.5724091192688605], [0.38238724851919936, 0.5724091192688605], [0.38238724851919936, 0.5837727556324969], [0.0588284162134906, 0.5837727556324969]]], "char": 2653, "page": 3, "part": "page_3_text.txt"}
    context: Yang J. 2010. Identification of a new lamin A/C mutation in a Chinese family affected with atrioventricular block as the prominent phenotype. J. Huazhong Univ. Sci. Technol. Med. Sci. 30(1):103-7 REPORT PREPARATION by: Christina Austin-Tse, PhD on November 4, 2015 FINAL REPORT by: Ozge Birsoy, PhD on November
  - Name: DOE, JOHN DOB: 12/31/1999 Sex: Male Race/Ethnicity: White Family #: F012345 MRN: 0123456789 Referring facility: Double Helix Hospital Referring physician: Dr. DNA Copies to: CGC Accession ID: PM-XX-12345 Specimen: Blood, Peripheral Lab Control Number: ABC123 Received: 01/24/2014 Page: 1 of 2 REPORT SUPPLEMENT COVERAGE OF ANALYZED GENES Analysis included 335 genes that have been previously implicated in cardiac diseases and myopathies including cardiomyopathies, myopathies, congenital heart diseases, arrhythmias, conduction disorders, and cardiac amyloid. The table below provides the list of these genes (and their coverage at ≥8X). Please note that the presence of pathogenic variation in genes not analyzed or with incomplete coverage cannot
    confidence: 0.8
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    context: Name: DOE, JOHN DOB: 12/31/1999 Sex: Male Race/Ethnicity: White Family #: F012345 MRN: 0123456789 Referring facility: Double Helix Hospital Referring physician: Dr. DNA Copies to: CGC Accession ID: PM-XX-12345 Specimen: Blood, Peripheral Lab Control Number: ABC123 Received: 01/24/2014 Page: 1 of 2 REPORT SUPPLEMENT COVERAGE OF ANALYZED GENES Analysis included 335 genes that have been previously implicated in cardiac diseases and myopathies including cardiomyopathies, myopathies, congenital heart diseases, arrhythmias, conduction disorders, and cardiac amyloid. The table below provides the list of these genes (and their coverage at ≥8X). Please note that the presence of pathogenic variation in genes not analyzed or with incomplete coverage cannot

Scan	HR files
Scan Type	s3
Location	pii-tools-public/test/health_report.pdf
Document Type	pdf
PII Severity	3-CRITICAL
Object Size	275594
PII Counts	Personal date_of_birth: 2 address: 11 phone: 11 email: 1 name: 27 first_name: 1 last_name: 1 Sensitive gender: 2 Medical health: 5

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